Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs201298080 chr1:49039231 TG/T 1.31E-6 129 37.3 111.63 0.57 KM Plot
TGCT rs201385093 chr16:67600349 G/GTTGC 0 133 46.07 24.1 0.57 KM Plot
TGCT rs201580887 chr2:3487331 T/TCTC 2.43E-5 131 40.57 66.17 25.32 KM Plot
TGCT rs201784438 chr20:58139912 CAGAA/C 3.59E-13 130 40.57 79.62 17.1 KM Plot
TGCT rs202080011 chr20:58140004 GAGAC/G 2.79E-13 131 39.38 79.62 17.1 KM Plot
TGCT rs2025249 chr6:42568248 A/G 7.34E-7 134 27.03 49.93 37.62 KM Plot
TGCT rs2025250 chr6:42572494 G/A 2.74E-8 133 20.6 51.67 37.7 KM Plot
TGCT rs2027362 chr6:28332698 T/C 0 134 45.83 29.65 0.57 KM Plot
TGCT rs2039625 chr9:71484439 A/T 8.87E-6 134 160.53 32.58 42.1 KM Plot
TGCT rs2049836 chr8:116909621 G/T 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs2072318 chr6:28348418 A/G 0 133 46.07 29.65 0.57 KM Plot
TGCT rs2072319 chr6:28348660 T/C 0 133 46.07 29.65 0.57 KM Plot
TGCT rs2096404 chr13:78234988 T/G 1.1E-5 132 15.7 35.37 42.18 KM Plot
TGCT rs2105439 chr13:78235317 T/C 1.22E-5 131 15.7 35.37 42.1 KM Plot
TGCT rs2111826 chr3:170140846 A/G 5.69E-5 128 21.13 36.63 42.18 KM Plot